Aguilar, M.; Lado, C. 2012. Ecological Niche Models reveal the importance of climate variability for the biogeography of protosteloid amoebae. ISME Journal.  DOI: ISMEJ.2012.12.

Alarcón, M.; Vargas, P.; Sáez, L.; Molero, J.;  Aldasoro, J. J. 2012. Genetic diversity of mountain plants: two migration episodes of Mediterranean Erodium (Geraniaceae). Molecular Phylogenetics and Evolution 63: 866-876.  

Albaladejo, R.; Guzmán, B.; González-Martínez, S.C.; Aparicio, A. 2012. Pollen flow and mating patterns across a "relictual" mediterranean landscape: extensive pollen flow buy few pollen donors. PLosOne 7(11): e49012. 

Bello M.A.; Rudall P.J.; Hawkins, J.A. 2012. Combined phylogenetic analyses reveal interfamilial relationships and patterns of floral evolution in the eudicot order Fabales. Cladistics. DOI 10.1111/j.1096-0031.2012.00392.x

Blanco-Pastor, J.L.; Vargas, P.; Pfeil, B.E. 2012. Coalescent simulations reveal hybridization and incomplete lineage sorting in mediterranean Linaria. PLoS ONE 7 (6): e39089. 

Buscardo, E.; Rodríguez-Echevarría, S.; Barrico, L.; García, M.A.; Freitas, H.; Martín, M.P.; De Angelis, P.; Muller, L.A.H. 2012. Is the potentail for the formation of common mycorrhizal networks influenced by fire frequency?. Soil Biology & Biochemistry. 46: 136-144 doi:10.1016/j.soilbio.2011.12.007

Calviño-Cancela, M.; Escudero, M.; Rodríguez-Pérez, J.; Cano, E.; Vargas, P., Velo-Antón, G., Traveset, A. The role of seed dispersal, pollination and historical effects on genetic patterns of an insular plant that has lost its only seed disperser. Journal of Biogeography 39: 1996-2006.

Carneiro-Torres, D.; Cordeiro, I.; Giulietti, A.M.; Riina, R. 2012. Euphorbia flaviana, a new species from the inselbergs of Bahia (Brazil) and lectotypification of E. crossadenia. Syst. Bot. 37: 688-693.

Cires, E.; Cuesta, C.; Vargas, P.; Fernández Prieto, J.A. 2012. Unravelling the evolutionary history of the polyploid complex Ranunculus parnassiifolius (Ranunculaceae). Biological Journal of the Linnean Society 107: 477-493. 

Damayanti, L.; Muñoz, J.; Wicke, S.; Symmank, L.; Shaw, B.; Frahm, J.-P.; Quandt, D. 2012. Common but new: Bartramia rosamrosiae sp. nov. a "new" widespread species from the Mediterranean and western North America. Phytotaxa 73, 37-59.

De Vega, C.; Guzmán, B.; Lachance, M.A.; Steenhuisen, S.L.; Johnson, S.D.; Herrera, C.M. 2012. Metschnikowia proteae sp. nov., a nectarivorous insect-associated yeast species from Africa. International Journal of Systematic and Evolutionary Microbiology 62: 2538-2545. 

Domaschke, S.; Fernández Mendoza, F.; García, M.A.; Martín, M.P.; Printzen, C. 2012. Reduced genetic diversity in Antarctic populations of the lichen Cetraria aculeata and its photobiont. Polar Research DOI: 10.3402/polar.v31i0.17353  

Estrella, M.d.l.; Mateo, R.G.; Wieringa, J.J.; Mackinder, B.; MUÑOZ, J. 2012. Legume diversity patterns in West Central Africa: implications of species biology on the significance of variables within species distribution models. PLoS ONE 7(7): e41526

Faulkes, Z.; Feria, T.P.; Muñoz, J. 2012. Do Marmorkrebs, Procambarus fallax f. virginalis, threaten freshwater Japanese ecosystems? Aquatic Biosystems 8:13

Felicísimo, A.M.; Muñoz, J. 2012. Le vent et la dispersion des plantes. Pour la Science 416: 40-46.

Fernández Alonso, J.L. 2012. Epilobium ciliatum Rafin. (Onagraceae), una nueva adventicia potencialmente invasora en la Península Ibérica. Acta Bot.Malacitana 37: 179-184. 

Fernández Alonso, J.L.; Cuadros Villalobos, H. 2012. Sanguisuga, un género nuevo neotropical de Cytinaceae y una conexión sudamericana en la familia.  Caldasia 34(2): 291-308.

Grande, J.R.; Kallunki, J.K.; Arbo, M.M.; Berry, P.E.; Huber, O.; Riina, R. 2012. Botanical novelties from Sierra de Maigualida, southern Venezuela II. Anales del Jardín Botánico de Madrid 69: 7-19.

Horn, J.W.; Van Ee, B.W.; Morawetz, J.J.; Riina, R.; Steinmann, V.W.; Berry, P.E.; Wurdack, K.J. 2012. Phylogenetics and the evolution of major structural characters in the giant genus Euphorbia L. (Euphorbiaceae). Mol. Phyl. Evol. 63: 305-326.

Jeppson, M.; Larsson, E.; Martín, M.P. 2012. Lycoperdon rupicola and L. subumbrinum - two new puffballs from Europe. Mycological Progress DOI 10.1007/s11557-011-0804-8

Kautmanová, I.; Tomsovsky, M.; Dueñas, M.; M.P. Martín. 2012. European species of Clavaria (Agaricales, Agaricomycetes) with dark basidiomata - a morphological and molecular study. Persoonia 29: 133-145.  http://dx.doi.org/10.3767/003158512X661543. 

Kemler, M.; Martín, M.P.; Telleria, M.T.; Schäfer, A.M.; Yorkov, A.; Begerow, D. 2012. Contrasting phylogenetic patterns of anther smuts (Pucciniomycotina: Mycrobotryum) reflect phylogenetic patterns of their caryophyllaceous hosts. Org. DIvers. Evol. DOI 10.1007/s13127-012-0115-1

Marques, I.; Fuertes Aguilar, J.; Martins-Loução, A.; Nieto Feliner, G. 2012. Spatial-temporal patterns of flowering asynchrony and pollinator fidelity in hybridizing species of Narcissus. Evolutionary Ecology 26:1433-1450.

Marques, I.; Nieto Feliner, G.; Martins-Loução, A.; Fuertes Aguilar, J. 2012. Genome size and base composition variation in natural and experimental Narcissus hybrids. Annals of Botany 109: 257-264.

Martín, M.P. 2012. Rhizopogon Fr.  (pp 200-203). In H. Knudsen, Vesterholt J. (edt.) Funga Nordica. Agaricoid, boletoid, clavariod, cyphelloid and gasteroid genera. Nordsvamp, Copnhagen. 1083 pp

Mateo, R.G.; Felicísimo, A.M.; Potter, J.; Guisan, A.; Muñoz, J. 2012. Do stacked species distribution models reflect altitudinal diversity patterns? PLoS ONE 7(3): e32586

Melo I; Cardoso J; Dueñas M; Telleria MT; Salcedo I. 2012. Peniophora aluticolor, an orphaned species restudied. Nova Hedwigia 93: 437-440.

Muñoz, J. et al. 2012. CARE, Ministerio del Ambiente, Unión Europea & Tinker Foundation (eds.). Plan de Manejo Actualizado y Priorizado del Bosque Protector Kutukú Shaimi, 2012-2017. Macas, Ecuador. CARE, Ministerio del Ambiente, Unión Europea & Tinker Foundation.

Nieto Feliner, G.; Rosselló, J. A. 2012. Concerted evolution of multigene families and homoeologous recombination. In: Wendel, J., Greilhuber, J., Dolezel,  J., Leitch, I. J., Plant Genome Diversity. Vol. 1: Plant genomes, their residents, and their evolutionary dynamics. Pp. 171-193. Springer, Wien, N. York.

Nogales, M.; Heleno, R.; Traveset, A.; Vargas, P. 2012 Evidence for overlooked mechanisms of long-distance seed dispersal to and between oceanic islands. The New Phytologist 194: 313-317.

Palacios Duque, L.;  Fernández Alonso, J.L.  2012. Dos nuevas especies de la sección Brevispicae del género Sloanea (Elaeocarpaceae) para Colombia.  Anales Jard. Bot. Madrid. 69(1): 91-95.

Pino, R.; Burgaz, A.R.; Martín, M.P. 2012. Species delimitations in the Cladonia cariosa group (Cladoniaceae, Ascomycota). The Lichenologist 44(1): 121-135 doi:10.1017/S002428291100065X  

Pino-Bodas, R.; Ahti, T.; Stenroos, S.; Martín, M.P.; Burgaz, A.R. 2012. Cladonia conista and C. humilis (Cladoniaceae) are different species. Biblioteca Lichenologica 108:161-176.

Pino-Bodas, R.; Burgaz, A.R.; Martín, M.P.;  Lumbsch, H. T. 2012. Phenotipical plasticity and homoplasy complicate species delimitation in the Cladonia gracilis group (Cladoniaceae, Ascomycota). Organism, Diverstiy & Evolution 11:343-355 DOI 10.1007/s13127-011-0062-2

Riina, R. and Berry, Berry, P.E. 2011-2012. Euphorbia Planetary Biodiversity Inventory database. http://app.tolkin.org/projects/72/taxa

Santos-Gally, R. Vargas, P.; Arroyo, J. 2012. Insights into Neogene Mediterranean biogeography based on phylogenetic relationships of mountain and lowland lineages of Narcissus (Amaryllidaceae). Journal of Biogeography 39: 782-798.

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Stech, M.; McDaniel, S.F.; Hernández-Maqueda, R.; Ros, R.M.; Werner, O.; Muñoz, J.; Quandt, D. 2012. Phylogeny of haplolepideous mosses - Challenges and perspectives. Journal of Bryology 34: 173-186

Tellería, M.T.; Melo, I.; Dueñas, M.; Salcedo, I.; Beltrán-Tejera, E.; Rodríguez-Armas, J.L.; M.P. Martín. 2012. Sistotremastrum guttuliferum: a new species from the Macaronesian islands. Mycological Progress. 6 pages. DOI 10.1007/s11557-012-0876-0 (on line: 19 December 2012)

Tellería, J.L.; Santos, T.; Refoyo, P.; Muñoz, J. 2012. Use of ring recoveries to predict habitat suitability in small passerines. Diversity & Distributions doi: 10.1111/j.1472-4642.2012.00900.x

Tellería, M.T.; Dueñas, M.; Beltrán-Tejera, E.; Rodíguez-Armas, J.L.;  Martín, M.P. 2012. A new species of Hyphoderma (Meruliaceae, Polyporales) and its discrimination from closely-related taxa. Mycologia 104: 1121-1132  http://dx.doi.org/10.3852/11.344

Tellería, M.T.; Dueñas, M.; Melo, I.; Beltrán-Tejera, E.; Rodríguez-Armas, J.L.; Salcedo, I.;  Martín, M.P. 2012. Gloeocystidiellum kenyense in Azores and Madeira. Mycotaxon 119: 337-343. http://dx.doi.org/10.5248/119.337 

Valente, L.M.; Manning, J.C.; Goldblatt, P.; Vargas, P. 2012. Did pollination shifts drive diversification in southern African Gladiolus? Evaluating the model of pollinator-driven speciation. American Naturalist 180: 83-98.

Vargas, P.; Heleno, R.; Traveset, A.; Nogales, M. 2012 Colonization of the Galápagos Islands by plants with no specific syndromes for long-distance dispersal: a new perspective. Ecography 35: 33-43. 

Yang, Y.; Riina, R.; Morawetz, J.J.; Haevermans, T.; Aubriot, X.; Berry, P.E. 2012. Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae). Taxon 61:  764-789.